Illumina Bridge¶

Connect ClawBio to the Illumina Connected Analytics (ICA) platform. List projects, browse pipeline runs, and pull analysis outputs into your local environment for downstream processing.

Quick Demo¶

python3 skills/illumina-bridge/illumina_bridge.py --demo

CLI Reference¶

# List ICA projects
python3 skills/illumina-bridge/illumina_bridge.py \
  --list-projects

# List pipeline runs in a project
python3 skills/illumina-bridge/illumina_bridge.py \
  --project <project_id> --list-runs

# Pull output from a pipeline run
python3 skills/illumina-bridge/illumina_bridge.py \
  --project <project_id> --run <run_id> --output /tmp/demo

Requirements¶

An Illumina Connected Analytics account
An ICA API key (set via ICA_API_KEY environment variable)
requests Python package

Domain Decisions¶

Pipeline outputs are downloaded as-is without transformation
File integrity is verified via checksums provided by ICA
Large files (>1 GB) are streamed to avoid memory issues